ALB protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ALB

Albumin. (656 aa)

Predicted Functional Partners:

AHSG

0.905

FGG

0.782

ENSAHAP00000024063

0.772

ENSAHAP00000024123

0.772

ENSAHAP00000024174

0.772

FGA

0.772

FGB

0.756

ENSAHAP00000026210

0.701

ENSAHAP00000019427

0.696

MB

0.695

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHSG	ALB	ENSAHAP00000001957	ENSAHAP00000004131	Alpha 2-HS glycoprotein.	Albumin.	0.905
AHSG	ENSAHAP00000024063	ENSAHAP00000001957	ENSAHAP00000024063	Alpha 2-HS glycoprotein.	annotation not available	0.883
AHSG	ENSAHAP00000024123	ENSAHAP00000001957	ENSAHAP00000024123	Alpha 2-HS glycoprotein.	annotation not available	0.883
AHSG	ENSAHAP00000024174	ENSAHAP00000001957	ENSAHAP00000024174	Alpha 2-HS glycoprotein.	annotation not available	0.883
AHSG	ENSAHAP00000026210	ENSAHAP00000001957	ENSAHAP00000026210	Alpha 2-HS glycoprotein.	annotation not available	0.980
AHSG	FGA	ENSAHAP00000001957	ENSAHAP00000028153	Alpha 2-HS glycoprotein.	Fibrinogen alpha chain.	0.984
AHSG	FGB	ENSAHAP00000001957	ENSAHAP00000028154	Alpha 2-HS glycoprotein.	Fibrinogen beta chain.	0.948
AHSG	FGG	ENSAHAP00000001957	ENSAHAP00000028152	Alpha 2-HS glycoprotein.	Fibrinogen gamma chain.	0.960
ALB	AHSG	ENSAHAP00000004131	ENSAHAP00000001957	Albumin.	Alpha 2-HS glycoprotein.	0.905
ALB	ENSAHAP00000019427	ENSAHAP00000004131	ENSAHAP00000019427	Albumin.	annotation not available	0.696
ALB	ENSAHAP00000024063	ENSAHAP00000004131	ENSAHAP00000024063	Albumin.	annotation not available	0.772
ALB	ENSAHAP00000024123	ENSAHAP00000004131	ENSAHAP00000024123	Albumin.	annotation not available	0.772
ALB	ENSAHAP00000024174	ENSAHAP00000004131	ENSAHAP00000024174	Albumin.	annotation not available	0.772
ALB	ENSAHAP00000026210	ENSAHAP00000004131	ENSAHAP00000026210	Albumin.	annotation not available	0.701
ALB	FGA	ENSAHAP00000004131	ENSAHAP00000028153	Albumin.	Fibrinogen alpha chain.	0.772
ALB	FGB	ENSAHAP00000004131	ENSAHAP00000028154	Albumin.	Fibrinogen beta chain.	0.756
ALB	FGG	ENSAHAP00000004131	ENSAHAP00000028152	Albumin.	Fibrinogen gamma chain.	0.782
ALB	MB	ENSAHAP00000004131	ENSAHAP00000022551	Albumin.	Myoglobin.	0.695
ENSAHAP00000019427	ALB	ENSAHAP00000019427	ENSAHAP00000004131	annotation not available	Albumin.	0.696
ENSAHAP00000019427	ENSAHAP00000026210	ENSAHAP00000019427	ENSAHAP00000026210	annotation not available	annotation not available	0.748