STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTCFCCCTC-binding factor. (792 aa)    
Predicted Functional Partners:
RAD21L1
RAD21 cohesin complex component like 1.
   
 0.793
RAD21
RAD21 cohesin complex component.
   
 0.793
STAG2
Stromal antigen 2.
   
 
 0.724
EP300
E1A binding protein p300.
   
 0.659
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.649
ENSAHAP00000001119
annotation not available
   
 
 0.631
STAG1
Stromal antigen 1.
   
 
 0.631
ENSAHAP00000016610
annotation not available
   
 
 0.615
ENSAHAP00000016615
annotation not available
   
 
 0.615
BARD1
BRCA1 associated RING domain 1.
    
 0.605
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.