Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOLC1Nucleolar and coiled-body phosphoprotein 1. (675 aa)    
Predicted Functional Partners:
NOP56
NOP56 ribonucleoprotein.
   
 0.999
NOP58
NOP58 ribonucleoprotein.
   
 0.998
DKC1
Dyskerin pseudouridine synthase 1.
   
 0.998
GAR1
GAR1 ribonucleoprotein.
   
 0.970
DHX15
DEAH-box helicase 15.
   
   0.966
TRUB1
TruB pseudouridine synthase family member 1.
   
 0.965
POLR1A
RNA polymerase I subunit A.
   
 0.964
CEBPZ
CCAAT enhancer binding protein zeta.
   
   0.956
RSL1D1
Ribosomal L1 domain containing 1.
   
 
 0.948
ENSAHAP00000008941
annotation not available
   
 0.942
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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