ENSAHAP00000004606 protein (Apteryx haastii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

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[Homology]

Score

ENSAHAP00000004606

annotation not available (120 aa)

Predicted Functional Partners:

NTNG1

0.597

PLA2G4A

0.576

RXFP1

0.528

ENSAHAP00000011786

0.528

ENSAHAP00000014406

0.528

LGR4

0.528

RXFP2

0.528

ENSAHAP00000027749

0.528

RIPK4

0.517

LRIT1

0.507

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAHAP00000004606	ENSAHAP00000011786	ENSAHAP00000004606	ENSAHAP00000011786	annotation not available	annotation not available	0.528
ENSAHAP00000004606	ENSAHAP00000014406	ENSAHAP00000004606	ENSAHAP00000014406	annotation not available	annotation not available	0.528
ENSAHAP00000004606	ENSAHAP00000027749	ENSAHAP00000004606	ENSAHAP00000027749	annotation not available	annotation not available	0.528
ENSAHAP00000004606	LGR4	ENSAHAP00000004606	ENSAHAP00000022760	annotation not available	Leucine rich repeat containing G protein-coupled receptor 4.	0.528
ENSAHAP00000004606	LRIT1	ENSAHAP00000004606	ENSAHAP00000004620	annotation not available	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.507
ENSAHAP00000004606	NTNG1	ENSAHAP00000004606	ENSAHAP00000020480	annotation not available	Netrin G1.	0.597
ENSAHAP00000004606	PLA2G4A	ENSAHAP00000004606	ENSAHAP00000004940	annotation not available	Phospholipase A2 group IVA.	0.576
ENSAHAP00000004606	RIPK4	ENSAHAP00000004606	ENSAHAP00000018985	annotation not available	Receptor interacting serine/threonine kinase 4.	0.517
ENSAHAP00000004606	RXFP1	ENSAHAP00000004606	ENSAHAP00000000945	annotation not available	Relaxin family peptide receptor 1.	0.528
ENSAHAP00000004606	RXFP2	ENSAHAP00000004606	ENSAHAP00000024991	annotation not available	Relaxin family peptide receptor 2.	0.528
ENSAHAP00000011786	ENSAHAP00000004606	ENSAHAP00000011786	ENSAHAP00000004606	annotation not available	annotation not available	0.528
ENSAHAP00000011786	ENSAHAP00000014406	ENSAHAP00000011786	ENSAHAP00000014406	annotation not available	annotation not available	0.551
ENSAHAP00000011786	ENSAHAP00000027749	ENSAHAP00000011786	ENSAHAP00000027749	annotation not available	annotation not available	0.551
ENSAHAP00000011786	LGR4	ENSAHAP00000011786	ENSAHAP00000022760	annotation not available	Leucine rich repeat containing G protein-coupled receptor 4.	0.551
ENSAHAP00000011786	LRIT1	ENSAHAP00000011786	ENSAHAP00000004620	annotation not available	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.631
ENSAHAP00000011786	NTNG1	ENSAHAP00000011786	ENSAHAP00000020480	annotation not available	Netrin G1.	0.665
ENSAHAP00000011786	RIPK4	ENSAHAP00000011786	ENSAHAP00000018985	annotation not available	Receptor interacting serine/threonine kinase 4.	0.446
ENSAHAP00000011786	RXFP1	ENSAHAP00000011786	ENSAHAP00000000945	annotation not available	Relaxin family peptide receptor 1.	0.904
ENSAHAP00000011786	RXFP2	ENSAHAP00000011786	ENSAHAP00000024991	annotation not available	Relaxin family peptide receptor 2.	0.845
ENSAHAP00000014406	ENSAHAP00000004606	ENSAHAP00000014406	ENSAHAP00000004606	annotation not available	annotation not available	0.528