STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LLPHLLP homolog, long-term synaptic facilitation factor. (119 aa)    
Predicted Functional Partners:
RPL3
Ribosomal protein L3.
    
 
 0.938
MRTO4
MRT4 homolog, ribosome maturation factor.
   
 
 0.838
PARP12
poly(ADP-ribose) polymerase family member 12.
    
   0.838
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.831
TMA16
Translation machinery associated 16 homolog.
   
 
 0.826
BRIX1
Biogenesis of ribosomes BRX1.
   
   0.804
NIP7
Nucleolar pre-rRNA processing protein NIP7.
   
   0.804
ENSAHAP00000009929
annotation not available
   
 
 0.788
ENSAHAP00000012042
annotation not available
   
   0.787
EBNA1BP2
EBNA1 binding protein 2.
   
   0.786
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.