STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FDFT1Farnesyl-diphosphate farnesyltransferase 1. (404 aa)    
Predicted Functional Partners:
SC5D
sterol-C5-desaturase.
  
 0.997
CYP51A1
Cytochrome P450 family 51 subfamily A member 1.
  
 
 0.989
HSD17B7
Hydroxysteroid 17-beta dehydrogenase 7.
   
 
 0.981
LSS
Lanosterol synthase.
 
 
 0.976
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.974
RETSAT
Retinol saturase.
  
 
 0.973
PYROXD2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
  
 
 0.973
SQLE
Squalene epoxidase.
 
 
 0.973
FDPS
Farnesyl diphosphate synthase.
  
 0.966
MSMO1
Methylsterol monooxygenase 1.
  
 0.961
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.