STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB33ARAB33A, member RAS oncogene family. (193 aa)    
Predicted Functional Partners:
ATG16L1
Autophagy related 16 like 1.
    
 0.953
GDI2
GDP dissociation inhibitor 2.
    
 0.886
TRAPPC8
Trafficking protein particle complex 8.
    
 0.879
TRAPPC4
Trafficking protein particle complex 4.
    
 0.868
TRAPPC6B
Trafficking protein particle complex 6B.
   
 0.867
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.861
USO1
USO1 vesicle transport factor.
   
 0.849
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.844
ENSAHAP00000022604
annotation not available
    
 0.844
ENSAHAP00000009595
annotation not available
    
 0.828
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.