STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NKX1-1NK1 homeobox 1. (408 aa)    
Predicted Functional Partners:
CREB3L1
cAMP responsive element binding protein 3 like 1.
      
 0.878
DIRAS2
DIRAS family GTPase 2.
    
 
 0.634
DIRAS1
DIRAS family GTPase 1.
    
 
 0.634
TMEM120B
Transmembrane protein 120B.
      
 0.620
TMEM120A
Transmembrane protein 120A.
      
 0.620
SOX3
SRY-box transcription factor 3.
    
 
 0.608
SOX1
SRY-box transcription factor 1.
    
 
 0.608
LCAT
Lecithin-cholesterol acyltransferase.
      
 0.606
HEY1
Hes related family bHLH transcription factor with YRPW motif 1.
    
 
 0.596
HEY2
Hes related family bHLH transcription factor with YRPW motif 2.
    
 
 0.596
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.