Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRMT61AtRNA methyltransferase 61A. (308 aa)    
Predicted Functional Partners:
TRMT6
tRNA methyltransferase 6.
   
 0.999
WDR4
WD repeat domain 4.
   
 
 0.996
METTL1
Methyltransferase like 1.
  
 0.995
TRMT61B
tRNA methyltransferase 61B.
  
  
0.992
TRMT11
tRNA methyltransferase 11 homolog.
   
 
 0.991
VPS36
Vacuolar protein sorting 36 homolog.
    
  0.982
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.982
THUMPD3
THUMP domain containing 3.
     
 0.972
THUMPD2
THUMP domain containing 2.
   
 
 0.971
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
  
 0.944
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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