Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP13Matrix metallopeptidase 13. (471 aa)    
Predicted Functional Partners:
OPTC
Opticin.
    
  0.954
ENSAHAP00000001710
annotation not available
     
 0.937
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.922
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.899
MMP7
Matrix metallopeptidase 7.
   
 0.843
MMP16
Matrix metallopeptidase 16.
   
  0.838
MMP17
Matrix metallopeptidase 17.
   
  0.838
ENSAHAP00000023702
annotation not available
   
 0.829
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 
 0.818
MMP15
Matrix metallopeptidase 15.
   
 0.814
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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