STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLX4IPSLX4 interacting protein. (512 aa)    
Predicted Functional Partners:
SLX4
SLX4 structure-specific endonuclease subunit.
    
 
 0.983
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
    
 
 0.931
ERCC1
ERCC excision repair 1, endonuclease non-catalytic subunit.
    
 
 0.906
NARS1
asparaginyl-tRNA synthetase 1.
    
 
 0.825
EME1
Essential meiotic structure-specific endonuclease 1.
      
 0.678
SMC1B
Structural maintenance of chromosomes 1B.
    
 
 0.626
RAD54L2
RAD54 like 2.
      
 0.610
FANCM
FA complementation group M.
    
 
 0.604
DHX40
DEAH-box helicase 40.
      
 0.580
ATRN
Attractin.
      
 0.574
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.