IFT22 protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

IFT22

Intraflagellar transport 22. (186 aa)

Predicted Functional Partners:

IFT46

0.999

HSPB11

0.999

IFT172

0.999

IFT81

0.999

ENSAHAP00000011129

0.999

IFT74

0.999

IFT80

0.999

IFT52

0.999

IFT57

0.999

IFT27

0.999

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAHAP00000011129	HSPB11	ENSAHAP00000011129	ENSAHAP00000005742	annotation not available	Heat shock protein family B (small) member 11.	0.998
ENSAHAP00000011129	IFT172	ENSAHAP00000011129	ENSAHAP00000008272	annotation not available	Intraflagellar transport 172.	0.999
ENSAHAP00000011129	IFT22	ENSAHAP00000011129	ENSAHAP00000008554	annotation not available	Intraflagellar transport 22.	0.999
ENSAHAP00000011129	IFT27	ENSAHAP00000011129	ENSAHAP00000026588	annotation not available	Intraflagellar transport 27.	0.999
ENSAHAP00000011129	IFT46	ENSAHAP00000011129	ENSAHAP00000004455	annotation not available	Intraflagellar transport 46.	0.999
ENSAHAP00000011129	IFT52	ENSAHAP00000011129	ENSAHAP00000024325	annotation not available	Intraflagellar transport 52.	0.999
ENSAHAP00000011129	IFT57	ENSAHAP00000011129	ENSAHAP00000025490	annotation not available	Intraflagellar transport 57.	0.999
ENSAHAP00000011129	IFT74	ENSAHAP00000011129	ENSAHAP00000013985	annotation not available	Intraflagellar transport 74.	0.999
ENSAHAP00000011129	IFT80	ENSAHAP00000011129	ENSAHAP00000021678	annotation not available	Intraflagellar transport 80.	0.999
ENSAHAP00000011129	IFT81	ENSAHAP00000011129	ENSAHAP00000009055	annotation not available	Intraflagellar transport 81.	0.999
HSPB11	ENSAHAP00000011129	ENSAHAP00000005742	ENSAHAP00000011129	Heat shock protein family B (small) member 11.	annotation not available	0.998
HSPB11	IFT172	ENSAHAP00000005742	ENSAHAP00000008272	Heat shock protein family B (small) member 11.	Intraflagellar transport 172.	0.995
HSPB11	IFT22	ENSAHAP00000005742	ENSAHAP00000008554	Heat shock protein family B (small) member 11.	Intraflagellar transport 22.	0.999
HSPB11	IFT27	ENSAHAP00000005742	ENSAHAP00000026588	Heat shock protein family B (small) member 11.	Intraflagellar transport 27.	0.999
HSPB11	IFT46	ENSAHAP00000005742	ENSAHAP00000004455	Heat shock protein family B (small) member 11.	Intraflagellar transport 46.	0.996
HSPB11	IFT52	ENSAHAP00000005742	ENSAHAP00000024325	Heat shock protein family B (small) member 11.	Intraflagellar transport 52.	0.995
HSPB11	IFT57	ENSAHAP00000005742	ENSAHAP00000025490	Heat shock protein family B (small) member 11.	Intraflagellar transport 57.	0.991
HSPB11	IFT74	ENSAHAP00000005742	ENSAHAP00000013985	Heat shock protein family B (small) member 11.	Intraflagellar transport 74.	0.996
HSPB11	IFT80	ENSAHAP00000005742	ENSAHAP00000021678	Heat shock protein family B (small) member 11.	Intraflagellar transport 80.	0.986
HSPB11	IFT81	ENSAHAP00000005742	ENSAHAP00000009055	Heat shock protein family B (small) member 11.	Intraflagellar transport 81.	0.996