ENSAHAP00000008904 protein (Apteryx haastii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAHAP00000008904

annotation not available (654 aa)

Predicted Functional Partners:

MICAL2

0.896

ENSAHAP00000021826

0.659

EHBP1

0.654

RAB8B

0.594

RAB10

0.594

RAB15

0.594

ENSAHAP00000015203

0.594

RAB8A

0.594

GAREM1

0.589

STK4

0.576

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHBP1	ENSAHAP00000008904	ENSAHAP00000016626	ENSAHAP00000008904	EH domain binding protein 1.	annotation not available	0.654
EHBP1	ENSAHAP00000015203	ENSAHAP00000016626	ENSAHAP00000015203	EH domain binding protein 1.	annotation not available	0.704
EHBP1	GAREM1	ENSAHAP00000016626	ENSAHAP00000028050	EH domain binding protein 1.	GRB2 associated regulator of MAPK1 subtype 1.	0.704
EHBP1	MICAL2	ENSAHAP00000016626	ENSAHAP00000008928	EH domain binding protein 1.	Microtubule associated monooxygenase, calponin and LIM domain containing 2.	0.654
EHBP1	RAB10	ENSAHAP00000016626	ENSAHAP00000007541	EH domain binding protein 1.	RAB10, member RAS oncogene family.	0.704
EHBP1	RAB15	ENSAHAP00000016626	ENSAHAP00000009712	EH domain binding protein 1.	RAB15, member RAS oncogene family.	0.704
EHBP1	RAB8A	ENSAHAP00000016626	ENSAHAP00000018669	EH domain binding protein 1.	RAB8A, member RAS oncogene family.	0.704
EHBP1	RAB8B	ENSAHAP00000016626	ENSAHAP00000006743	EH domain binding protein 1.	RAB8B, member RAS oncogene family.	0.704
ENSAHAP00000008904	EHBP1	ENSAHAP00000008904	ENSAHAP00000016626	annotation not available	EH domain binding protein 1.	0.654
ENSAHAP00000008904	ENSAHAP00000015203	ENSAHAP00000008904	ENSAHAP00000015203	annotation not available	annotation not available	0.594
ENSAHAP00000008904	ENSAHAP00000021826	ENSAHAP00000008904	ENSAHAP00000021826	annotation not available	annotation not available	0.659
ENSAHAP00000008904	GAREM1	ENSAHAP00000008904	ENSAHAP00000028050	annotation not available	GRB2 associated regulator of MAPK1 subtype 1.	0.589
ENSAHAP00000008904	MICAL2	ENSAHAP00000008904	ENSAHAP00000008928	annotation not available	Microtubule associated monooxygenase, calponin and LIM domain containing 2.	0.896
ENSAHAP00000008904	RAB10	ENSAHAP00000008904	ENSAHAP00000007541	annotation not available	RAB10, member RAS oncogene family.	0.594
ENSAHAP00000008904	RAB15	ENSAHAP00000008904	ENSAHAP00000009712	annotation not available	RAB15, member RAS oncogene family.	0.594
ENSAHAP00000008904	RAB8A	ENSAHAP00000008904	ENSAHAP00000018669	annotation not available	RAB8A, member RAS oncogene family.	0.594
ENSAHAP00000008904	RAB8B	ENSAHAP00000008904	ENSAHAP00000006743	annotation not available	RAB8B, member RAS oncogene family.	0.594
ENSAHAP00000008904	STK4	ENSAHAP00000008904	ENSAHAP00000000394	annotation not available	Serine/threonine kinase 4.	0.576
ENSAHAP00000015203	EHBP1	ENSAHAP00000015203	ENSAHAP00000016626	annotation not available	EH domain binding protein 1.	0.704
ENSAHAP00000015203	ENSAHAP00000008904	ENSAHAP00000015203	ENSAHAP00000008904	annotation not available	annotation not available	0.594