TARDBP protein (Apteryx haastii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TARDBP

TAR DNA binding protein. (414 aa)

Predicted Functional Partners:

UBE2I

0.966

ENSAHAP00000014312

0.952

GSC

0.951

HNRNPK

0.927

ENSAHAP00000022875

0.918

HNRNPM

0.917

HNRNPA2B1

0.897

CHCHD2

0.867

EWSR1

0.865

ENSAHAP00000026107

0.862

Your Current Organism:

Apteryx haastii

NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHCHD2	TARDBP	ENSAHAP00000010276	ENSAHAP00000017142	Coiled-coil-helix-coiled-coil-helix domain containing 2.	TAR DNA binding protein.	0.867
ENSAHAP00000014312	ENSAHAP00000026107	ENSAHAP00000014312	ENSAHAP00000026107	annotation not available	annotation not available	0.934
ENSAHAP00000014312	EWSR1	ENSAHAP00000014312	ENSAHAP00000021974	annotation not available	EWS RNA binding protein 1.	0.717
ENSAHAP00000014312	HNRNPA2B1	ENSAHAP00000014312	ENSAHAP00000023346	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.957
ENSAHAP00000014312	HNRNPK	ENSAHAP00000014312	ENSAHAP00000016461	annotation not available	Heterogeneous nuclear ribonucleoprotein K.	0.938
ENSAHAP00000014312	HNRNPM	ENSAHAP00000014312	ENSAHAP00000012411	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.843
ENSAHAP00000014312	TARDBP	ENSAHAP00000014312	ENSAHAP00000017142	annotation not available	TAR DNA binding protein.	0.952
ENSAHAP00000014312	UBE2I	ENSAHAP00000014312	ENSAHAP00000016762	annotation not available	Ubiquitin conjugating enzyme E2 I.	0.535
ENSAHAP00000022875	ENSAHAP00000026107	ENSAHAP00000022875	ENSAHAP00000026107	annotation not available	annotation not available	0.650
ENSAHAP00000022875	HNRNPA2B1	ENSAHAP00000022875	ENSAHAP00000023346	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.566
ENSAHAP00000022875	HNRNPK	ENSAHAP00000022875	ENSAHAP00000016461	annotation not available	Heterogeneous nuclear ribonucleoprotein K.	0.652
ENSAHAP00000022875	TARDBP	ENSAHAP00000022875	ENSAHAP00000017142	annotation not available	TAR DNA binding protein.	0.918
ENSAHAP00000026107	ENSAHAP00000014312	ENSAHAP00000026107	ENSAHAP00000014312	annotation not available	annotation not available	0.934
ENSAHAP00000026107	ENSAHAP00000022875	ENSAHAP00000026107	ENSAHAP00000022875	annotation not available	annotation not available	0.650
ENSAHAP00000026107	EWSR1	ENSAHAP00000026107	ENSAHAP00000021974	annotation not available	EWS RNA binding protein 1.	0.767
ENSAHAP00000026107	HNRNPA2B1	ENSAHAP00000026107	ENSAHAP00000023346	annotation not available	Heterogeneous nuclear ribonucleoprotein A2/B1.	0.978
ENSAHAP00000026107	HNRNPK	ENSAHAP00000026107	ENSAHAP00000016461	annotation not available	Heterogeneous nuclear ribonucleoprotein K.	0.981
ENSAHAP00000026107	HNRNPM	ENSAHAP00000026107	ENSAHAP00000012411	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.983
ENSAHAP00000026107	TARDBP	ENSAHAP00000026107	ENSAHAP00000017142	annotation not available	TAR DNA binding protein.	0.862
ENSAHAP00000026107	UBE2I	ENSAHAP00000026107	ENSAHAP00000016762	annotation not available	Ubiquitin conjugating enzyme E2 I.	0.673