STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF41Ring finger protein 41. (312 aa)    
Predicted Functional Partners:
USP8
Ubiquitin specific peptidase 8.
    
 0.989
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.906
USP21
Ubiquitin specific peptidase 21.
    
 0.887
ENSAHAP00000019608
annotation not available
    
 0.887
WWP1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.870
NEDD4
NEDD4 E3 ubiquitin protein ligase.
    
 0.869
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.869
SMURF1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.869
NEDD4L
NEDD4 like E3 ubiquitin protein ligase.
    
 0.869
ITCH
Itchy E3 ubiquitin protein ligase.
    
 0.868
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.