STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TLNRD1Talin rod domain containing 1. (355 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.963
APBB1IP
Amyloid beta precursor protein binding family B member 1 interacting protein.
    
 0.917
ENSAHAP00000020396
annotation not available
   
 0.886
ITGB4
Integrin subunit beta 4.
   
 0.860
ITGB8
Integrin subunit beta 8.
    
 0.859
ITGB6
Integrin subunit beta 6.
   
 0.857
ITGB5
Integrin subunit beta 5.
   
 0.846
PXN
Paxillin.
    
 0.838
RAPH1
Ras association (RalGDS/AF-6) and pleckstrin homology domains 1.
    
 0.830
PIP5K1A
Phosphatidylinositol-4-phosphate 5-kinase type 1 alpha.
    
 0.828
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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