STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA11Homeobox A11. (297 aa)    
Predicted Functional Partners:
PBX1
PBX homeobox 1.
    
 
 0.599
PBX4
PBX homeobox 4.
    
 
 0.599
PBX3
PBX homeobox 3.
    
 
 0.599
HOXC4
Homeobox C4.
   
 
 0.497
HOXA7
Homeobox A7.
   
 
0.485
HOXC6
Homeobox C6.
   
 
 0.481
HOXA3
Homeobox A3.
   
 
0.435
ENSAHAP00000026086
annotation not available
   
 
 0.432
MEIS1
Meis homeobox 1.
    
 
 0.426
MEIS2
Meis homeobox 2.
    
 
 0.426
Your Current Organism:
Apteryx haastii
NCBI taxonomy Id: 8823
Other names: A. haastii, Great spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.