STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW73613.1Na+ driven multidrug efflux pump; COG: Na+-driven multidrug efflux pump; Pfam: MatE::PF01554. (490 aa)    
Predicted Functional Partners:
CBW73614.1
Unnamed protein product.
       0.538
CBW74233.1
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.531
CBW75213.1
Phytoene synthase (EC 2.5.1.32); COG: Phytoene/squalene synthetase; Pfam: Squalene/phytoene synthase::PF00494.
   
   0.525
CBW75379.1
Farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21); COG: Phytoene/squalene synthetase; Pfam: Squalene/phytoene synthase::PF00494.
   
   0.525
CBW73611.1
ADA regulatory protein / O6-methylguanine-DNA methyltransferase (EC 2.1.1.63); COG: Adenosine deaminase; Pfam: Metal binding domain of Ada::PF02805<br>6-O-methylguanine DNA methyltransferase, DNA binding domain::PF01035<br>Bacterial regulatory helix-turn-helix proteins, AraC family::PF00165<br>6-O-methylguanine DNA methyltransferase, ribonuclease-like domain::PF02870.
     
 0.509
CBW73612.1
Unnamed protein product.
       0.462
macB
Macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.444
CBW73911.1
Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12); COG: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain::PF02800.
   
  
 0.414
CBW73910.1
Glyceraldehyde 3-phosphate dehydrogenase (EC 1.2.1.12); COG: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain::PF00044; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.414
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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