STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW73631.1General secretion pathway protein D; COG: Type II secretory pathway, component PulD; Pfam: Bacterial type II and III secretion system protein::PF00263<br>Bacterial type II/III secretion system short domain::PF03958. (847 aa)    
Predicted Functional Partners:
CBW73630.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.955
CBW73629.1
General secretion pathway protein F; COG: Type II secretory pathway, component PulF; Pfam: Bacterial type II secretion system protein F domain::PF00482.
 
  
 0.952
CBW73627.1
General secretion pathway protein G; COG: Type II secretory pathway, pseudopilin PulG; Pfam: Bacterial type II secretion system protein G::PF08334<br>Prokaryotic N-terminal methylation motif::PF07963.
  
 0.879
CBW73625.1
General secretion pathway protein I; COG: Type II secretory pathway, pseudopilin PulG; Pfam: Bacterial type II secretion system protein I/J::PF02501<br>Prokaryotic N-terminal methylation motif::PF07963.
 
  
 0.865
CBW73623.1
General secretion pathway protein K; COG: Type II secretory pathway, component PulK; Pfam: General secretion pathway protein K::PF03934.
 
   
 0.855
CBW73624.1
General secretion pathway protein J; COG: Type II secretory pathway, component PulJ; Pfam: Prokaryotic N-terminal methylation motif::PF07963.
 
  
 0.810
CBW73626.1
General secretion pathway protein H; COG: Type II secretory pathway, pseudopilin PulG.
 
  
 0.772
CBW73633.1
Invasion protein IAGB; COG: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); Pfam: Transglycosylase SLT domain::PF01464.
 
  
 0.605
CBW73855.1
Type 4 prepilin peptidase pilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.604
CBW73632.1
Unnamed protein product.
       0.571
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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