STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSAlanyl-tRNA synthetase (EC 6.1.1.7); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (893 aa)    
Predicted Functional Partners:
pheT
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20); COG: Phenylalanyl-tRNA synthetase beta subunit; Pfam: B3/4 domain::PF03483<br>Ferredoxin-fold anticodon binding domain::PF03147<br>Putative tRNA binding domain::PF01588<br>tRNA synthetase B5 domain::PF03484.
 
 
 0.884
aspS
Aspartyl-tRNA synthetase (EC 6.1.1.12); Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
  
 0.856
CBW74206.1
Tetratricopeptide repeat family protein; COG: FOG: TPR repeat.
   
 0.849
thrS
Threonyl-tRNA synthetase (EC 6.1.1.3); Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
  
 
 0.845
CBW75242.1
Insecticidal toxin complex protein TccB.
   
 0.838
leuS
Leucyl-tRNA synthetase (EC 6.1.1.4); COG: Leucyl-tRNA synthetase; Pfam: Anticodon-binding domain::PF08264<br>tRNA synthetases class I (I, L, M and V)::PF00133<br>tRNA synthetases class I (M)::PF09334; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.831
valS
Valyl-tRNA synthetase (EC 6.1.1.9); Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.820
metG
Methionyl-tRNA synthetase (EC 6.1.1.10); Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.797
CBW74411.1
Unnamed protein product.
       0.773
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.761
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.