STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75635.1Cobalamin biosynthesis protein CbiM homolog. (230 aa)    
Predicted Functional Partners:
CBW75307.1
Phage shock protein A; COG: Phage shock protein A (IM30), suppresses sigma54-dependent transcription; Pfam: PspA/IM30 family::PF04012.
  
     0.689
CBW75949.1
O-antigen ligase; COG: Lipid A core - O-antigen ligase and related enzymes; Pfam: O-Antigen Polymerase::PF04932.
  
     0.653
CBW75909.1
Sensory transduction protein kinase (EC 2.7.3.-); COG: FOG: EAL domain.
  
     0.648
CBW75006.1
Outer membrane porin protein 32 precursor; COG: Outer membrane protein (porin).
  
     0.646
CBW75634.1
Transcriptional regulator, LuxR family; COG: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Pfam: Bacterial regulatory proteins, luxR family::PF00196.
 
     0.643
CBW74149.1
Porphobilinogen deaminase (EC 2.5.1.61); COG: Uncharacterized enzyme of heme biosynthesis; Pfam: HemX::PF04375.
  
     0.626
CBW73624.1
General secretion pathway protein J; COG: Type II secretory pathway, component PulJ; Pfam: Prokaryotic N-terminal methylation motif::PF07963.
  
     0.625
CBW74172.1
OpgC; COG: Uncharacterized protein conserved in bacteria.
  
     0.574
CBW73626.1
General secretion pathway protein H; COG: Type II secretory pathway, pseudopilin PulG.
  
     0.564
CBW75779.1
Chromate transport protein; COG: Chromate transport protein ChrA; Pfam: Chromate transporter::PF02417.
  
     0.558
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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