STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW74466.1Unnamed protein product. (104 aa)    
Predicted Functional Partners:
CBW74468.1
Phage-related protein; COG: Predicted DNA-binding protein with an HTH domain.
       0.778
CBW74467.1
Unnamed protein product.
       0.773
CBW74465.1
Unnamed protein product.
       0.713
CBW74469.1
Unnamed protein product.
       0.690
CBW74470.1
Baseplate_J domain-containing protein; Unnamed protein product; COG: Uncharacterized homolog of phage Mu protein gp47.
       0.689
CBW74464.1
Unnamed protein product; COG: Uncharacterized protein conserved in bacteria.
       0.686
CBW74462.1
Unnamed protein product.
       0.468
CBW74461.1
Unnamed protein product.
       0.467
CBW74460.1
Unnamed protein product.
       0.439
CBW74459.1
Unnamed protein product.
       0.433
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.