STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75239.1Putative alpha-1,2-mannosidase; COG: Putative alpha-1,2-mannosidase. (243 aa)    
Predicted Functional Partners:
CBW75238.1
Hypothetical protein; COG: Putative alpha-1,2-mannosidase.
 
     0.976
CBW75094.1
Chitinase (EC 3.2.1.14); COG: Gamma-glutamyltransferase; Pfam: Carbohydrate binding domain::PF02839.
  
     0.570
CBW75240.1
Unnamed protein product.
       0.430
CBW73601.1
Hypothetical cytosolic protein; Pfam: Antibiotic biosynthesis monooxygenase::PF03992.
  
     0.412
CBW76075.1
Transcriptional regulator, TetR family; COG: Transcriptional regulator; Pfam: Bacterial regulatory proteins, tetR family::PF00440.
  
     0.412
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.