STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75887.1Unnamed protein product. (94 aa)    
Predicted Functional Partners:
CBW75884.1
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein pyrR; COG: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Pfam: Phosphoribosyl transferase domain::PF00156.
       0.675
CBW75885.1
Hypothetical cytosolic protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.675
CBW75886.1
Transcriptional regulator, algH; COG: Putative transcriptional regulator; Pfam: Uncharacterized ACR, COG1678::PF02622; Belongs to the UPF0301 (AlgH) family.
       0.675
CBW75888.1
Unnamed protein product.
       0.572
pyrB
Aspartate carbamoyltransferase (EC 2.1.3.2); COG: Aspartate carbamoyltransferase, catalytic chain; Pfam: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain::PF00185<br>Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain::PF02729; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.454
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.