STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75574.1Unnamed protein product; COG: Methylase of polypeptide chain release factors. (326 aa)    
Predicted Functional Partners:
prfA
Bacterial Peptide Chain Release Factor 1 (RF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.770
CBW75572.1
CARBAMOYL TRANSFERASE; COG: Predicted carbamoyl transferase, NodU family; Pfam: Carbamoyltransferase::PF02543.
       0.613
CBW75575.1
ABC transporter; COG: ABC-type siderophore export system, fused ATPase and permease components; Pfam: ABC transporter::PF00005.
       0.556
CBW75576.1
Non-ribosomal peptide synthetase modules; COG: Non-ribosomal peptide synthetase modules and related proteins; Pfam: AMP-binding enzyme::PF00501<br>Condensation domain::PF00668<br>Phosphopantetheine attachment site::PF00550<br>Thioesterase domain::PF00975.
       0.476
CBW75571.1
Antibiotic/siderophore biosynthesis protein.
       0.446
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.