STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75534.1Peptidoglycan-specific endopeptidase, M23 family; COG: Membrane proteins related to metalloendopeptidases; Pfam: LysM domain::PF01476<br>Peptidase family M23::PF01551. (267 aa)    
Predicted Functional Partners:
CBW75533.1
Aldose 1-epimerase family protein; COG: Galactose mutarotase and related enzymes; Pfam: Aldose 1-epimerase::PF01263.
       0.773
CBW75532.1
Unnamed protein product.
       0.533
CBW74595.1
Multimodular transpeptidase-transglycosylase PBP 1A; COG: Membrane carboxypeptidase/penicillin-binding protein; Pfam: Transglycosylase::PF00912<br>Penicillin binding protein transpeptidase domain::PF00905.
  
     0.506
CBW75306.1
Multimodular transpeptidase-transglycosylase PBP 1A; COG: Membrane carboxypeptidase/penicillin-binding protein; Pfam: Transglycosylase::PF00912<br>Penicillin binding protein transpeptidase domain::PF00905.
  
     0.483
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.