STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW73798.1dTDP-glucose 4,6-dehydratase (EC 4.2.1.46); COG: Nucleoside-diphosphate-sugar epimerases; Pfam: NAD dependent epimerase/dehydratase family::PF01370. (353 aa)    
Predicted Functional Partners:
CBW74237.1
UDP-glucose 6-dehydrogenase (EC 1.1.1.22); COG: Predicted UDP-glucose 6-dehydrogenase; Pfam: UDP-glucose/GDP-mannose dehydrogenase family, central domain::PF00984<br>UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain::PF03720<br>UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain::PF03721.
 0.993
CBW74920.1
UDP-glucuronate 4-dehydrogenase (decarboxylating) (EC 1.1.1.-); COG: Nucleoside-diphosphate-sugar epimerases; Pfam: NAD dependent epimerase/dehydratase family::PF01370.
  
  
 
0.915
CBW73799.1
Glycosyltransferase (EC 2.4.1.-); COG: Glycosyltransferase; Pfam: Glycosyl transferases group 1::PF00534.
  
  
 0.858
CBW73796.1
Glycosyltransferase involved in cell wall biogenesis (EC 2.4.-.-); Pfam: Glycosyl transferase family 2::PF00535.
 
    0.818
CBW73797.1
Unnamed protein product; Pfam: GlcNAc-PI de-N-acetylase::PF02585.
  
    0.777
CBW74923.1
UDP-4-amino-L-arabinose synthase (EC 2.6.1.-); COG: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Pfam: DegT/DnrJ/EryC1/StrS aminotransferase family::PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.731
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.646
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.645
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.642
rpsL
SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.635
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.