STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW76017.1Unnamed protein product. (1034 aa)    
Predicted Functional Partners:
CBW76018.1
Unnamed protein product; COG: Outer membrane receptor proteins, mostly Fe transport.
 
 
   0.957
CBW76020.1
Baseplate assembly protein W; COG: Phage baseplate assembly protein W; Pfam: Gene 25-like lysozyme::PF04965.
 
 
   0.957
CBW76021.1
VgrG protein; COG: Uncharacterized protein conserved in bacteria.
 
 
   0.939
CBW76022.1
Unnamed protein product; COG: Uncharacterized protein containing LysM domain.
 
   0.932
CBW76024.1
Unnamed protein product; Pfam: Putative phage tail protein (CHP2241_phage)::PF09540.
 
 
   0.896
CBW76026.1
Tail sheath protein Gp18.
 
 
   0.895
CBW76025.1
Tail sheath protein gp18; COG: Phage tail sheath protein FI.
 
 
   0.895
CBW73550.1
Unnamed protein product.
 
   0.868
CBW75289.1
Unnamed protein product.
 
   0.867
CBW76027.1
Tail sheath protein gp18; COG: Phage tail sheath protein FI.
 
 
   0.863
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.