STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW76148.1Unnamed protein product; COG: Outer membrane protein; Pfam: Lipid A 3-O-deacylase (PagL)::PF09411. (248 aa)    
Predicted Functional Partners:
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
  0.900
lpxK
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130); Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
  0.900
CBW76131.1
Outer-membrane lipoprotein lolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
  
 0.727
CBW75545.1
Hypothetical protein; COG: Predicted membrane protein.
  
     0.702
CBW74008.1
Hemolysin; COG: Large exoproteins involved in heme utilization or adhesion; Pfam: Haemagluttinin repeat::PF05594<br>haemagglutination activity domain::PF05860.
  
     0.685
CBW75031.1
Outer membrane protein OmpH; COG: Outer membrane protein; Pfam: Outer membrane protein (OmpH-like)::PF03938; Belongs to the skp family.
    
 
 0.634
CBW73960.1
Hypothetical protein; COG: Predicted membrane protein.
  
     0.566
CBW76241.1
Acylamino-acid-releasing enzyme (EC 3.4.19.1); COG: Dienelactone hydrolase and related enzymes.
  
     0.545
rpoH
RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
  
 0.542
CBW76147.1
Unnamed protein product.
       0.520
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.