STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW76201.1Hypothetical protein; COG: Uncharacterized conserved protein; Pfam: Protein of unknown function (DUF493)::PF04359; Belongs to the UPF0250 family. (101 aa)    
Predicted Functional Partners:
CBW76202.1
D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4); COG: D-alanyl-D-alanine carboxypeptidase; Pfam: Penicillin-binding protein 5, C-terminal domain::PF07943<br>D-alanyl-D-alanine carboxypeptidase::PF00768; Belongs to the peptidase S11 family.
  
    0.640
CBW76207.1
Transcriptional regulator; COG: ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
    0.630
CBW76204.1
Alpha/beta hydrolase; COG: Predicted hydrolase of the alpha/beta superfamily.
       0.595
CBW76205.1
Ferredoxin, 2Fe-2s; COG: Ferredoxin.
       0.585
CBW76208.1
Hypothetical exported protein; COG: ABC-type transport system involved in resistance to organic solvents, periplasmic component; Pfam: mce related protein::PF02470.
 
     0.571
CBW76203.1
Unnamed protein product.
       0.550
CBW76210.1
ABC transporter permease protein; COG: ABC-type transport system involved in resistance to organic solvents, permease component; Pfam: Domain of unknown function DUF140::PF02405.
 
     0.541
CBW76209.1
ABC transporter ATP-binding protein; COG: ABC-type transport system involved in resistance to organic solvents, ATPase component; Pfam: ABC transporter::PF00005.
       0.482
lipA
Lipoic acid synthetase (EC 2.8.1.8); Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
 
  
 0.471
CBW74639.1
Chaperone protein dnaJ; COG: Predicted membrane protein.
  
     0.446
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.