STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apaGApaG protein; COG: Uncharacterized protein affecting Mg2+/Co2+ transport; Pfam: Protein of unknown function (DUF525)::PF04379. (124 aa)    
Predicted Functional Partners:
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41); Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
  
 0.688
rsmA
Dimethyladenosine transferase (EC 2.1.1.-); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.671
CBW74704.1
Membrane-bound lytic murein transglycosylase A (EC 3.2.1.-); COG: Membrane-bound lytic murein transglycosylase; Pfam: 3D domain::PF06725<br>MltA specific insert domain::PF03562.
     
 0.588
CBW73744.1
Hypothetical protein; COG: Signal transduction histidine kinase; Pfam: Domain of unknown function DUF29::PF01724.
  
  
 0.534
CBW74356.1
Hypothetical protein; COG: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Pfam: Domain of unknown function DUF29::PF01724.
  
  
 0.534
CBW75203.1
Hypothetical protein; COG: Signal transduction histidine kinase; Pfam: Domain of unknown function DUF29::PF01724.
  
  
 0.534
CBW74701.1
Ribulose-phosphate 3-epimerase (EC 5.1.3.1); COG: Pentose-5-phosphate-3-epimerase; Pfam: Ribulose-phosphate 3 epimerase family::PF00834.
       0.516
gph
Phosphoglycolate phosphatase (EC 3.1.3.18); Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
       0.516
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.