STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75257.1Catechol 1,2-dioxygenase (EC 1.13.11.1); COG: Protocatechuate 3,4-dioxygenase beta subunit. (130 aa)    
Predicted Functional Partners:
CBW74097.1
Flavodoxin reductase family protein; COG: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; Pfam: Oxidoreductase FAD-binding domain::PF00970<br>2Fe-2S iron-sulfur cluster binding domain::PF00111<br>Oxidoreductase NAD-binding domain::PF00175.
  
  
 0.587
CBW75258.1
Transposase.
       0.550
CBW74942.1
3-oxoadipate enol-lactonase (EC 3.1.1.24); COG: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Pfam: alpha/beta hydrolase fold::PF00561.
  
   
 0.538
CBW74741.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5); COG: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; Pfam: Coenzyme A transferase::PF01144.
 
  
 0.497
CBW74229.1
Chorismate mutase (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51); COG: Prephenate dehydratase; Pfam: ACT domain::PF01842<br>Chorismate mutase type II::PF01817<br>Prephenate dehydratase::PF00800.
  
   
 0.467
CBW73820.1
Phenylacetyl-CoA 2-monooxygenase electron transfer component (EC 1.14.13-); COG: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Pfam: Oxidoreductase FAD-binding domain::PF00970<br>2Fe-2S iron-sulfur cluster binding domain::PF00111<br>Oxidoreductase NAD-binding domain::PF00175.
  
  
 0.462
CBW75259.1
F-box domain-containing protein; Unnamed protein product.
       0.459
rhiI
Methyltransferase (EC 2.1.1.-); COG: SAM-dependent methyltransferases; Pfam: Methyltransferase domain::PF08241<br>Methyltransferase domain::PF08242.
       0.452
CBW75751.1
Benzoate transport protein; COG: Uncharacterized protein involved in benzoate metabolism; Pfam: Benzoate membrane transport protein::PF03594.
 
   
 0.447
CBW73929.1
Adenylosuccinate lyase (EC 4.3.2.2); COG: Adenylosuccinate lyase; Pfam: Adenylosuccinate lyase C-terminal::PF08328<br>Lyase::PF00206; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  
 0.423
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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