STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW76287.1Hypothetical protein; COG: Putative heme iron utilization protein; Pfam: Pyridoxamine 5'-phosphate oxidase::PF01243. (219 aa)    
Predicted Functional Partners:
CBW74129.1
Cobalamin-binding protein; COG: ABC-type Fe3+-hydroxamate transport system, periplasmic component; Pfam: Periplasmic binding protein::PF01497.
  
    0.602
CBW74798.1
34 kDa membrane antigen precursor; COG: Uncharacterized protein probably involved in high-affinity Fe2+ transport.
   
    0.539
CBW74800.1
High-affinity iron permease; COG: High-affinity Fe2+/Pb2+ permease; Pfam: Iron permease FTR1 family::PF03239.
   
    0.529
pdxJ
Pyridoxal phosphate biosynthetic protein pdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.499
CBW74610.1
Glutamate synthase [NADPH] large chain (EC 1.4.1.13); COG: Glutamate synthase domain 1; Pfam: Glutamine amidotransferases class-II::PF00310<br>GXGXG motif::PF01493<br>Glutamate synthase central domain::PF04898<br>Conserved region in glutamate synthase::PF01645.
     
 0.477
CBW76288.1
Membrane protein mosC; COG: Permeases of the major facilitator superfamily; Pfam: Major Facilitator Superfamily::PF07690.
       0.452
CBW76286.1
H-NS-like proteins; COG: DNA-binding protein H-NS; Pfam: H-NS histone family::PF00816.
       0.426
CBW74067.1
OUTER MEMBRANE PROTEIN NOSA PRECURSOR; COG: Outer membrane receptor proteins, mostly Fe transport; Pfam: TonB-dependent Receptor Plug Domain::PF07715<br>TonB dependent receptor::PF00593.
  
  
 0.424
CBW74726.1
Fusaric acid resistance protein fusB / Fusaric acid resistance protein fusC / Fusaric acid resistance protein fusD; COG: Predicted membrane protein; Pfam: Fusaric acid resistance protein conserved region::PF04632.
  
     0.411
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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