STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW73915.1TolQ protein. (62 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase (EC 1.3.1.26); Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.773
bamE
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.773
fur
Ferric uptake regulation protein; COG: Fe2+/Zn2+ uptake regulation proteins; Pfam: Ferric uptake regulator family::PF01475; Belongs to the Fur family.
       0.539
lptE
Rare lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
       0.415
leuS
Leucyl-tRNA synthetase (EC 6.1.1.4); COG: Leucyl-tRNA synthetase; Pfam: Anticodon-binding domain::PF08264<br>tRNA synthetases class I (I, L, M and V)::PF00133<br>tRNA synthetases class I (M)::PF09334; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.415
CBW73918.1
DNA polymerase III, delta subunit (EC 2.7.7.7); COG: DNA polymerase III, delta subunit; Pfam: DNA polymerase III, delta subunit::PF06144.
       0.401
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.