STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW73891.1Nucleotidyltransferase domain protein; COG: UDP-N-acetylmuramate-alanine ligase. (206 aa)    
Predicted Functional Partners:
CBW73623.1
General secretion pathway protein K; COG: Type II secretory pathway, component PulK; Pfam: General secretion pathway protein K::PF03934.
  
     0.688
CBW74149.1
Porphobilinogen deaminase (EC 2.5.1.61); COG: Uncharacterized enzyme of heme biosynthesis; Pfam: HemX::PF04375.
  
     0.675
CBW73625.1
General secretion pathway protein I; COG: Type II secretory pathway, pseudopilin PulG; Pfam: Bacterial type II secretion system protein I/J::PF02501<br>Prokaryotic N-terminal methylation motif::PF07963.
  
     0.639
CBW73624.1
General secretion pathway protein J; COG: Type II secretory pathway, component PulJ; Pfam: Prokaryotic N-terminal methylation motif::PF07963.
  
     0.634
CBW73626.1
General secretion pathway protein H; COG: Type II secretory pathway, pseudopilin PulG.
  
     0.607
CBW75639.1
PIN domain; COG: Uncharacterized protein conserved in bacteria.
  
     0.607
CBW73938.1
Hypothetical exported protein; COG: Uncharacterized conserved protein.
  
     0.606
CBW75697.1
Unnamed protein product; COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.599
CBW73890.1
Thiol:disulfide interchange protein tlpA; COG: Thiol-disulfide isomerase and thioredoxins; Pfam: AhpC/TSA family::PF00578<br>Redoxin::PF08534.
   
   0.598
CBW76330.1
Hypothetical protein; COG: Uncharacterized protein conserved in bacteria.
  
     0.587
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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