STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW74891.1Hypothetical cytosolic protein; COG: Uncharacterized conserved protein; Pfam: Uncharacterised ACR, YfiH family COG1496::PF02578; Belongs to the multicopper oxidase YfiH/RL5 family. (301 aa)    
Predicted Functional Partners:
CBW74890.1
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70); Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
    0.932
CBW73950.1
Hypothetical cytosolic protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.673
bamD
Lipoprotein, ComL family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.615
CBW74892.1
Poly(3-hydroxyalkanoate) polymerase (EC 2.3.1.-); COG: Poly(3-hydroxyalkanoate) synthetase; Pfam: alpha/beta hydrolase fold::PF00561<br>Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus::PF07167.
       0.465
CBW75453.1
Non-ribosomal peptide synthetase modules (EC 6.3.2.-); COG: Non-ribosomal peptide synthetase modules and related proteins; Pfam: AMP-binding enzyme::PF00501<br>Condensation domain::PF00668<br>Phosphopantetheine attachment site::PF00550.
   
 
 0.416
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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