STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75495.1Protein tyrosine phosphatase (EC 3.1.3.48); COG: Protein-tyrosine-phosphatase; Pfam: Low molecular weight phosphotyrosine protein phosphatase::PF01451. (287 aa)    
Predicted Functional Partners:
CBW75497.1
Iron-sulfur cluster-binding protein; COG: Fe-S oxidoreductase.
       0.773
CBW75496.1
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4); COG: Enoyl-CoA hydratase/carnithine racemase; Pfam: Enoyl-CoA hydratase/isomerase family::PF00378.
       0.773
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
      0.638
CBW75453.1
Non-ribosomal peptide synthetase modules (EC 6.3.2.-); COG: Non-ribosomal peptide synthetase modules and related proteins; Pfam: AMP-binding enzyme::PF00501<br>Condensation domain::PF00668<br>Phosphopantetheine attachment site::PF00550.
  
 
 0.599
CBW75389.1
Deoxyribodipyrimidine photolyase (EC 4.1.99.3); COG: Deoxyribodipyrimidine photolyase; Pfam: DNA photolyase::PF00875<br>FAD binding domain of DNA photolyase::PF03441.
 
 
   0.591
CBW75576.1
Non-ribosomal peptide synthetase modules; COG: Non-ribosomal peptide synthetase modules and related proteins; Pfam: AMP-binding enzyme::PF00501<br>Condensation domain::PF00668<br>Phosphopantetheine attachment site::PF00550<br>Thioesterase domain::PF00975.
  
 
 0.548
CBW75494.1
Rrf2 family protein; COG: Predicted transcriptional regulator; Pfam: Transcriptional regulator::PF02082.
  
    0.540
rhiA
Modular polyketide synthase (EC 2.3.1.-); Rhizoxin biosynthesis.
   
 
 0.498
CBW75498.1
Transcriptional regulator, IclR family; COG: Transcriptional regulator; Pfam: IclR helix-turn-helix domain::PF09339<br>Bacterial transcriptional regulator::PF01614.
       0.494
CBW76246.1
Oxygen-independent coproporphyrinogen-III oxidase (EC 1.3.99.22); COG: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Pfam: HemN C-terminal region::PF06969<br>Radical SAM superfamily::PF04055; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.466
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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