STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBW75477.1DNA translocation competence protein ComA; COG: Predicted hydrolase (metallo-beta-lactamase superfamily); Pfam: Competence protein::PF03772<br>Metallo-beta-lactamase superfamily::PF00753. (939 aa)    
Predicted Functional Partners:
CBW76381.1
DNA processing protein; COG: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; Pfam: SMF family::PF02481.
 
  
 0.881
CBW76172.1
Amidophosphoribosyltransferase family protein; COG: Predicted amidophosphoribosyltransferases.
 
  
 0.866
CBW73855.1
Type 4 prepilin peptidase pilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.774
CBW73856.1
Type IV pilus assembly protein tapC; COG: Type II secretory pathway, component PulF; Pfam: Bacterial type II secretion system protein F domain::PF00482.
  
  
 0.740
CBW75478.1
DNase, TatD family (EC 3.1.-.-); COG: Mg-dependent DNase; Pfam: TatD related DNase::PF01026.
       0.727
CBW75480.1
Lipoprotein releasing system transmembrane protein lolC; COG: ABC-type transport system, involved in lipoprotein release, permease component; Pfam: Predicted permease::PF02687.
 
     0.720
CBW73629.1
General secretion pathway protein F; COG: Type II secretory pathway, component PulF; Pfam: Bacterial type II secretion system protein F domain::PF00482.
   
  
 0.703
CBW73918.1
DNA polymerase III, delta subunit (EC 2.7.7.7); COG: DNA polymerase III, delta subunit; Pfam: DNA polymerase III, delta subunit::PF06144.
 
   
 0.676
CBW73715.1
PHAGE TAIL PROTEIN; COG: Phage-related protein.
 
  
 0.670
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.669
Your Current Organism:
Paraburkholderia rhizoxinica
NCBI taxonomy Id: 882378
Other names: Burkholderia rhizoxinica HKI 454, P. rhizoxinica HKI 454, Paraburkholderia rhizoxinica HKI 454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.