Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBW73529.1 | CBW74546.1 | RBRH_00962 | RBRH_01709 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | 0.569 |
| CBW73529.1 | CBW76384.1 | RBRH_00962 | RBRH_01273 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | DNA topoisomerase III (EC 5.99.1.2); COG: Topoisomerase IA; Pfam: DNA topoisomerase::PF01131<br>Toprim domain::PF01751. | 0.567 |
| CBW73529.1 | mfd | RBRH_00962 | RBRH_03399 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.431 |
| CBW73529.1 | mutL | RBRH_00962 | RBRH_01632 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.931 |
| CBW73529.1 | mutS | RBRH_00962 | RBRH_03971 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.975 |
| CBW73529.1 | polA | RBRH_00962 | RBRH_01169 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | DNA polymerase I (EC 2.7.7.7); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| CBW73529.1 | recA | RBRH_00962 | RBRH_01977 | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.733 |
| CBW74088.1 | mutL | RBRH_00922 | RBRH_01632 | DNA repair protein radC; COG: DNA repair proteins; Pfam: RadC, DNA repair protein::PF04002; Belongs to the UPF0758 family. | DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.476 |
| CBW74088.1 | mutS | RBRH_00922 | RBRH_03971 | DNA repair protein radC; COG: DNA repair proteins; Pfam: RadC, DNA repair protein::PF04002; Belongs to the UPF0758 family. | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.553 |
| CBW74546.1 | CBW73529.1 | RBRH_01709 | RBRH_00962 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | 0.569 |
| CBW74546.1 | CBW76384.1 | RBRH_01709 | RBRH_01273 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | DNA topoisomerase III (EC 5.99.1.2); COG: Topoisomerase IA; Pfam: DNA topoisomerase::PF01131<br>Toprim domain::PF01751. | 0.998 |
| CBW74546.1 | mutL | RBRH_01709 | RBRH_01632 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.795 |
| CBW74546.1 | mutS | RBRH_01709 | RBRH_03971 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.526 |
| CBW74546.1 | polA | RBRH_01709 | RBRH_01169 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | DNA polymerase I (EC 2.7.7.7); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.964 |
| CBW74546.1 | recA | RBRH_01709 | RBRH_01977 | ATP-dependent DNA helicase recQ (EC 3.6.1.-); COG: Superfamily II DNA helicase; Pfam: DEAD/DEAH box helicase::PF00270<br>HRDC domain::PF00570<br>Helicase conserved C-terminal domain::PF00271<br>RQC domain::PF09382. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.873 |
| CBW75438.1 | CBW75440.1 | RBRH_03970 | RBRH_03972 | Unnamed protein product. | Unnamed protein product; COG: FKBP-type peptidyl-prolyl cis-trans isomerases 2. | 0.529 |
| CBW75438.1 | mutS | RBRH_03970 | RBRH_03971 | Unnamed protein product. | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.550 |
| CBW75440.1 | CBW75438.1 | RBRH_03972 | RBRH_03970 | Unnamed protein product; COG: FKBP-type peptidyl-prolyl cis-trans isomerases 2. | Unnamed protein product. | 0.529 |
| CBW75440.1 | mutS | RBRH_03972 | RBRH_03971 | Unnamed protein product; COG: FKBP-type peptidyl-prolyl cis-trans isomerases 2. | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.770 |
| CBW76384.1 | CBW73529.1 | RBRH_01273 | RBRH_00962 | DNA topoisomerase III (EC 5.99.1.2); COG: Topoisomerase IA; Pfam: DNA topoisomerase::PF01131<br>Toprim domain::PF01751. | DNA polymerase III, beta chain (EC 2.7.7.7); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for in [...] | 0.567 |
page 1 of 3