STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERGIC2ERGIC and golgi 2. (377 aa)    
Predicted Functional Partners:
ERGIC3
ERGIC and golgi 3.
   
0.997
DERL3
Derlin 3.
   
 
 0.957
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
  
 
 0.897
SEL1L3
SEL1L family member 3.
  
   0.896
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.800
GTSE1
G2 and S-phase expressed 1.
  
 0.800
COPE
Coatomer protein complex subunit epsilon.
   
 
 0.658
COPB1
Coatomer protein complex subunit beta 1.
   
   0.649
YARS1
tyrosyl-tRNA synthetase 1.
     
 0.630
SPCS1
Signal peptidase complex subunit 1.
    
   0.621
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.