STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3BUbiquitin protein ligase E3B. (1070 aa)    
Predicted Functional Partners:
UBE3C
Ubiquitin protein ligase E3C.
   
 
0.835
TRIP12
Thyroid hormone receptor interactor 12.
     
0.733
UBE2V1
Ubiquitin conjugating enzyme E2 V1.
     
 0.636
ENSAOWP00000026370
annotation not available
      
 0.519
GART
annotation not available
      
 0.519
ENSAOWP00000013676
annotation not available
    
 0.441
UBQLN4
Ubiquilin 4.
   
 0.429
UBE2G1
Ubiquitin conjugating enzyme E2 G1.
    
 0.419
ENSAOWP00000019049
annotation not available
    
 0.415
PUDP
Pseudouridine 5'-phosphatase.
      
 0.410
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.