STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCO2Beta-carotene oxygenase 2. (552 aa)    
Predicted Functional Partners:
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.713
RDH10
Retinol dehydrogenase 10.
   
 
 0.707
PNPLA4
Patatin like phospholipase domain containing 4.
     
 0.700
ENSAOWP00000002085
annotation not available
   
 
 0.692
ENSAOWP00000024508
annotation not available
     
 0.654
MYO9B
Myosin IXB.
    
 0.653
MYO9A
Myosin IXA.
    
 0.645
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
    
 0.585
ANLN
Anillin actin binding protein.
   
 
 0.533
DGAT1
Diacylglycerol O-acyltransferase 1.
   
 
 0.532
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.