STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TYW5tRNA-yW synthesizing protein 5. (175 aa)    
Predicted Functional Partners:
NPAS3
Neuronal PAS domain protein 3.
    
 0.690
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 0.690
EPAS1
Endothelial PAS domain protein 1.
    
 0.690
TRMT12
tRNA methyltransferase 12 homolog.
 
    
 0.551
ENSAOWP00000026831
annotation not available
      
 0.549
TYW3
tRNA-yW synthesizing protein 3 homolog.
      
 0.543
RIOX2
Ribosomal oxygenase 2.
      
 0.511
JMJD8
Jumonji domain containing 8.
      
 0.508
TRPA1
Transient receptor potential cation channel subfamily A member 1.
    
   0.499
RPS6
Ribosomal protein S6.
    
   0.499
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.