STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO7LIM domain 7. (1620 aa)    
Predicted Functional Partners:
AFDN
Afadin, adherens junction formation factor.
    
 0.908
ACTN4
Actinin alpha 4.
    
 0.788
ACTN1
Actinin alpha 1.
    
 0.788
ENSAOWP00000002013
annotation not available
     
 0.763
ENSAOWP00000012531
annotation not available
    
 0.718
ACTN2
Actinin alpha 2.
    
 0.718
VANGL2
VANGL planar cell polarity protein 2.
    
 0.651
VANGL1
VANGL planar cell polarity protein 1.
    
 0.651
DVL1
Dishevelled segment polarity protein 1.
    
 0.648
DVL3
Dishevelled segment polarity protein 3.
    
 0.648
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.