STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCF11PCF11 cleavage and polyadenylation factor subunit. (1707 aa)    
Predicted Functional Partners:
CLP1
Cleavage and polyadenylation factor I subunit 1.
    
 0.999
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.997
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.996
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.995
SYMPK
Symplekin.
    
 0.995
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.995
CSTF2
Cleavage stimulation factor subunit 2.
    
 0.990
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 0.985
ENSAOWP00000000058
annotation not available
   
 0.966
ENSAOWP00000012427
annotation not available
    
 0.964
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.