STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMG20AHigh mobility group 20A. (366 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
   
 0.900
RCOR1
REST corepressor 1.
   
 0.860
HMG20B
High mobility group 20B.
  
 
 
0.833
PHF21A
PHD finger protein 21A.
    
 0.817
RCOR3
REST corepressor 3.
   
 0.805
PHF14
PHD finger protein 14.
   
 
 0.758
POLRMT
RNA polymerase mitochondrial.
    
 0.743
ACTR8
Actin related protein 8.
    
 0.722
ARID4A
AT-rich interaction domain 4A.
    
  0.684
ARID4B
AT-rich interaction domain 4B.
    
  0.684
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.