STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFI1Growth factor independent 1 transcriptional repressor. (135 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.621
BARD1
BRCA1 associated RING domain 1.
    
  0.580
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.570
GTF3C5
General transcription factor IIIC subunit 5.
 
  
 0.548
CEBPA
CCAAT enhancer binding protein alpha.
    
 0.541
ENSAOWP00000023167
annotation not available
    
 0.536
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.534
SUFU
SUFU negative regulator of hedgehog signaling.
    
 0.533
RCOR1
REST corepressor 1.
    
 0.533
ENSAOWP00000027343
annotation not available
    
 0.531
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.