STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PATL2PAT1 homolog 2. (321 aa)    
Predicted Functional Partners:
DDX6
DEAD-box helicase 6.
   
 0.952
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.950
CNOT3
CCR4-NOT transcription complex subunit 3.
   
 0.948
DCP2
Decapping mRNA 2.
    
 0.947
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.943
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.941
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.938
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.937
EDC3
Enhancer of mRNA decapping 3.
    
 0.937
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
   
 
  0.931
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.