STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACTN4Actinin alpha 4. (927 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.962
ZYX
Zyxin.
   
 0.862
CTNNA2
Catenin alpha 2.
   
 0.858
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
   
 0.854
MICALL2
MICAL like 2.
    
0.842
MAGI1
Membrane associated guanylate kinase, WW and PDZ domain containing 1.
    
 0.835
MYL1
Myosin light chain 1.
   
 0.814
ENSAOWP00000024005
annotation not available
    
 0.809
ITGB1
Integrin subunit beta 1.
    
 0.807
ITGB5
Integrin subunit beta 5.
    
 0.806
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.