STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF3PHD finger protein 3. (2105 aa)    
Predicted Functional Partners:
POLR2A
RNA polymerase II subunit A.
    
 0.943
NIPBL
NIPBL cohesin loading factor.
   
  
 0.939
POLR2E
RNA polymerase II subunit E.
    
  0.906
BPTF
Bromodomain PHD finger transcription factor.
   
 
 
0.860
USP34
Ubiquitin specific peptidase 34.
   
 
  0.834
POLR2C
RNA polymerase II subunit C.
    
  0.830
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.821
TRIP12
Thyroid hormone receptor interactor 12.
   
  
 0.808
POLR2I
RNA polymerase II subunit I.
    
 0.797
POLR2B
RNA polymerase II subunit B.
   
 0.782
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.